Shikuma Lab Research

Research Summary

The overarching goal of the Shikuma Lab is to uncover the mechanics of bacteria-animal symbioses and bring these discoveries to the forefront of biomedical research.

Using an emerging host-microbe model, we discovered the first syringe-like structure from bacteria that stimulates the metamorphosis of an animal. Genes encoding these ancient and conserved structures called Contractile Injection Systems are found in diverse environments, including the microbiomes of nearly all adult humans.

The Shikuma Lab continues to create synergy between the historically separate fields of microbiology and developmental biology, leveraging the strengths of each field to transform insights.

Representative Publications   Technology Development

Molecular Syringes from Bacteria

Computer-generated model of nano syringes from bacteria

We discovered that bacteria produce tiny syringe-like structures that inject toxins into animal cells. These syringes could someday be harnessed for biotechnology purposes to deliver therapeutics to human cells.

Rocchi et al. Cell Reports 2019 

Ericson et al. eLife 2019

From Ships to Syringes

Science Glass 

An online platform for sharing scientific research with short and simple presentations.

Instructor visible through clear panel with drawings on it
What do bacteria do? Can they be helpful? How? Studying a simple bacteria-animal interaction will expand our fundamental understanding of how bacteria benefit animals and potentially yield new methods to manipulate microbes for beneficial purposes. 

Scientists currently lack a centralized location where short and simple presentations of their work are accessible to anyone with an internet connection. Enter Science Glass; an online platform where scientists explain their research to a broad audience.

Molecular Syringes from Human Gut Bacteria

Diagram of human gut and a contractile injection system that was derived from the gut

We discovered that the gut microbiomes of nearly all human adults (>99%) from the United States and Europe carry a previously undescribed contractile injection system. Our central hypothesis that this new injection system family comprise a key means of interaction between microbiome bacteria and human host.

Rojas et al. 2020 mSystems

Our Research is Funded by the Following Organizations

Logos in a 2x3 grid - Office of Naval Research, NIH, Gordon and Betty Moore Foundation, NSF, Alfred P. Sloan Foundation and ARCS